Scientists & Staff
Current ResearchResearch has focused on use of genomics tools to facilitate tree breeding activities for several fine hardwood tree species in the Central Hardwood Forest Region (CHFR). In addition, collaborations with other NRS scientists and Purdue University colleagues have been directed towards the quantification of heritable genetic variation within several hardwood tree species including black walnut, northern red oak, and black cherry, for a range of commercially important traits. Finally, phenotyping of full sib mapping populations for QTL discovery associated with adaptive traits as well as responses to both biotic and abiotic stressors is ongoing.
Research InterestsResearch interests have included investigation of how species-specific characteristics can potentially be translated to other species, within the context of developing robust, tree breeding/tree improvement programs for hardwood tree species that are inherently "challenging" to work with. Recognition of these biological limitations - and how to circumvent them - has remained an active research interest of mine for 40+ years. Additionally, the impacts of site heterogeneity on field experiments that are designed to yield robust estimations of genetic variation, and consequently, genetic gain, is an active research interest.
Past ResearchOver the past 15 years, research foci have included establishment of unique full sib mapping populations and their subsequent phenotyping for the purposes of QTL discovery. These populations were developed as part of a collaborative NSF-sponsored research project and has resulted in the development of a series of genomic tools across an array of six plant orders. Further information on this project can be found at hardwodgenomics.org. Additional research activities have included quantification of flooding responses between and within seven different MO oak species commonly found in riparian systems. Heritable genetic variation was detected for several species at the seed tree level and was not associated with physiographic (slope) origin. Also during this period, new approaches to breeding black walnuts for both timber and edible nut products were developed including the use of genomic marker systems to facilitate a more efficient 'breeding without breeding' approach to acheive program goals.
Why This Research is ImportantThis research is important because:
1. It focuses on defining the levels of genetic variation that are linked to adaptive traits for several important hardwood tree species in eastern US forests.
2. It uses forest genetics and tree breeding approaches for a group of keystone hardwood tree species that are considered to be under threat due to increasing exotic pest pressures, as well as climate change.
3. It elucidates how to best exploit heritable, within-species genetic variation for the improvement of both adaptive and commercially important traits.
4. It represents the only program of its kind that focuses on tree species that are very difficult to work with due to their inhernent biological constraints, including delayed flowering & fruting patterns.
- University of Missouri, Phd Horticulture, 2008
- Mississippi State University, M.S. Forest Genetics, 1978
- University of Massachusetts/Amherst, B.S Forestry Forest Management, 1976
- Adjunct Assistant Professor , Department of Forestry and Natural Resources, Purdue University 2017 - Current
- Supervisory Plant Biologist and Project Leader, USDA Forest Service, Northern Supervisory Plant Biologist and Project Leader, NRS14 and Co-Director, Hardwood Tree Improvement and Regeneration Center, Purdue University, West Lafayette, IN 47907 2017 - Current
- Assistant Research Professor, University of Missouri 2000 - 2017
- Tree Improvement Specialist, Missouri Department of Conservation 2000 - 2010
- Nursery Manager & Propagator, Bernheim Arboretum and Research Forest, Clermont, KY 1998 - 2000
- Tree Improvement Specialist, Indiana Department of Natural Resources, Division of Forestry 1978 - 1998
- International Dendrology Society
- Walnut Council (2004 - 2004)
Tree Improvement, Nut Culture
I have served in this organization since the mid 1980's. Life Member.
- International Oak Society
Participant/contributor in numerous meetings. Life Member.
Awards & Recognition
- Outstanding University of Missouri Graduate Faculty Award (Forestry), 2012
- American Pomological Society Shepard Award for Best Research Paper, 2009
- Black Walnut Achievement Award, Walnut Council, 2008
- Inagural IPPS Eastern Region-Scandanavian Region Exchange Award, 1999 Recipient of first exchange award between the International Plant Propagators' Society (IPPS) Eastern and Scandinavian Regions.
Featured Publications & Products
- Stevens, Kristian A.; Woeste, Keith ; Chakraborty, Sandeep ; Crepeau, Marc W.; Leslie, Charles A.; Martínez-García, Pedro J.; Puiu, Daniela ; Romero-Severson, Jeanne ; Coggeshall, Mark ; Dandekar, Abhaya M.; Kluepfel, Daniel ; Neale, David B.; Salzberg, Steven L.; Langley, Charles H. 2018. Genomic variation among and within six Juglans species. G3: Genes|Genomes|Genetics
- Hefty, Andrea R.; Aukema, Brian H.; Venette, Robert C.; Coggeshall, Mark V; McKenna, James R.; Seybold, Steven J. 2018. Reproduction and potential range expansion of walnut twig beetle across the Juglandaceae. Biological Invasions
- Zhao, Peng ; Zhou, Huijuan ; Coggeshall, Mark ; Reid, Bill ; Woeste, Keith. 2018. Discrimination and assessment of black walnut (Juglans nigra L.) cultivars using phenology and microsatellite markers (SSRs). Canadian Journal of Plant Science
- Ebrahimi, Aziz ; Lawson, Shaneka S.; Frank, Graham S.; Coggeshall, Mark V; Woeste, Keith E.; McKenna, James R. 2018. Pollen flow and paternity in an isolated and non-isolated black walnut (Juglans nigra L.) timber seed orchard. PLOS ONE
- Rink, George; Van Sambeek, J.W.; O'Connor, Phil; Coggeshall, Mark. 2017. Practical strategies of black walnut genetic improvement—an update. Walnut Council Bulletin. 44(2): 1-3, 10-11.
Publications & Products
- Woeste, Keith E.; Pike, Carolyn C.; Warren, James C.; Coggeshall, Mark V. 2021. Characterization of stem volume and form tradeoffs in a northern red oak (Quercus rubra) breeding population in early stages of selection. Annals of Forest Science
- Wu, Di ; Koch, Jennifer ; Coggeshall, Mark ; Carlson, John. 2019. The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species. Plant Molecular Biology
- Pike, Carolyn ; Warren, James ; Coggeshall, Mark. 2018. Trends in Production of Hardwood Tree Seedlings Across the Northeast United States From 2008 to 2016. Tree Planters' Notes: 61(1): 18-25.
- Vu, Danh C.; Vo, Phuc H.; Coggeshall, Mark V; Lin, Chung-Ho. 2018. Identification and Characterization of Phenolic Compounds in Black Walnut Kernels. Journal of Agricultural and Food Chemistry
- Konar, Arpita ; Choudhury, Olivia ; Bullis, Rebecca ; Fiedler, Lauren ; Kruser, Jacqueline M.; Stephens, Melissa T.; Gailing, Oliver ; Schlarbaum, Scott ; Coggeshall, Mark V; Staton, Margaret E.; Carlson, John E.; Emrich, Scott ; Romero-Severson, Jeanne. 2017. High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra. BMC Genomics
McKenna, J. R. and Coggeshall, M. V. 2018. The Genetic Improvement of Black Walnut for Timber Production, in Plant Breeding Reviews (ed I. Goldman), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9781119414735.ch6
Wu, D., Koch, J., Coggeshall, M., Carlson, J. 2019. The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species Plant Molecular Biology 99:251-264. https://doi.org/10.1007/s11103-018-0815-9
Pike, C, Warren, J, Coggeshall, M. 2018. Trends in production of hardwood tree seedlings across the northeast United States from 2008 to 2016. Tree Planter's Notes 61(1)18-25.
Danh C. Vu; Phuc H. Vo; Mark V. Coggeshall; Chung-Ho Lin. 2018. Identification and characterization of phenolic compounds in black walnut kernels. Journal of Agricultural and Food Chemistry 6(17):4503-4511. DOI: 10.1021/acs.jafc.8b01181
Oren, E., Klingeman, W., Gazis, R., Moulton, J., Lambdin, P., Coggeshall, M., Hulcr, J., Seybold, S.J., Hadziabdic, D. 2018. A novel molecular toolkit for rapid detection of the pathogen and primary vector of Thousand Cankers Disease. PLoS ONE 13(1): e0185087. https://doi.org/10.1371/journal.pone.0185087.
Ebrahimi, A., Mathur, S., Lawson, S.S., LaBonte, N.R., Lorch, A., Coggeshall, M.V., Woeste, KE. 2019. Microsatellite Borders and Microsequence Conservation in Juglans. Scientific Reports. 9:3748. https://www.nature.com/articles/s41598-019-39793-z#MOESM1
Konar, A., Choudhury, O., Bullis, R., Fiedler, L., Kruser, J.M., Stephens, M.T., Gailing, O., Schlarbaum, S., Coggeshall, M.V., Staton, M.E., Carlson, J.E., Emrich, S.,Romero-Severson, J. 2017. High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra. BMC Genomics (2017) 18:417. DOI 10.1186/s12864-017-3765-8
Harmon, M., Lane, T., Staton, M., Coggeshall, M.V., Best, T., Chien‑Chih Chen, Liang, H., Zembower, N., Drautz‑Moses, D.I., Yap Zhei Hwee, Schuster, S.C., Schlarbaum, S.E., Carlson, J.E., Gailing, O. 2017. Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.). BMC Res. Notes (2017) 10:369. DOI 10.1186/s13104-017-2653-2